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|Seriation, DNA sequencing and nanopores||05 NOV 2015||02:45pm - 03:30pm|
Joint work with Thomas Bruls, Fajwel Fogel and Antoine Recanati
We will first recall essential results about the seriation problem and its application to DNA sequencing. We will then present de novo sequencing result using data produced by Oxford Nanopores’ MinION prototype. We show that, with proper preprocessing, the spectral seriation solution almost perfectly reconstructs bacterial genomes.