Speaker Detail

Alexandre d'Aspremont photo

Alexandre d'Aspremont

Researcher at Ecole Normale Supérieure

Biography

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Related Sessions

Session Name Date Time
Seriation, DNA sequencing and nanopores 05 NOV 2015 02:45pm - 03:30pm

Abstract

Joint work with Thomas Bruls, Fajwel Fogel and Antoine Recanati

We will first recall essential results about the seriation problem and its application to DNA sequencing. We will then present de novo sequencing result using data produced by Oxford Nanopores’ MinION prototype. We show that, with proper preprocessing, the spectral seriation solution almost perfectly reconstructs bacterial genomes.